The inner sills are only visible from underneath the car, or if you peeled back the carpet inside the door (which they won't have done on the MOT).
If you imagine being underneath the middle of the car and looking out sideways, they're the back edge of the sills running front-back along the car (sticking down from the floor pan)
If that isn't the bit they meant, then they've used the wrong description as far as I would understand it
